HT3 T2: Analysing large scale PDB data using PDBe-KB

HT3: Databases

T2 (Tutorial): Analysing large scale PDB data using PDBe-KB

David Armstrong
Protein Data Bank in Europe (PDBe)
European Bioinformatics Institute (EMBL-EBI)
E-mail: davida@ebi.ac.uk

This hands-on session will demonstrate how users can perform detailed analysis of PDB data using the aggregated views from PDBe-KB. The tutorial will include interpreting ligand binding sites, identifying macromolecular interactions, and the access of superimposed structures.

Learning outcomes

  • Access the PDBe-KB aggregated views to view all structural data for a specific protein
  • Interpret ligand binding sites and macromolecular interactions to determine important functional amino acids

View superimposed protein structures and ligand binding sites to identify key regions and assess structural variability